Biology by Bradford · IB Biology SL + HL · C1.1

Lower
the hurdle.

An enzyme is a globular protein that speeds a reaction up without being used up. It works by making the hardest step easier — and everything about its shape, its collisions and its inhibitors comes back to that one idea.

01 · C1.1.1–C1.1.4 · The essentials

Catalysts
that lower
activation energy.

What they are

Enzymes are biological catalysts — globular proteins that speed up the chemical reactions of metabolism. Like all catalysts they are not consumed, so a single enzyme molecule works over and over.

How they work

They lower the activation energy: the energy barrier a reaction must cross before it can proceed. A lower barrier means far more reactant molecules have enough energy to react, so the reaction goes faster.

Where they act

The substrate binds at a specific region called the active site. Only a substrate with a complementary shape fits, which is why each enzyme catalyses only its own reaction — its specificity.

energy progress of reaction → Ea without enzyme Ea with enzyme substrate product the enzyme does not change the start or end energy — only the size of the hurdle between them
With the enzyme, the activation-energy barrier is much smaller · the enzyme changes only the height of the hurdle, never the energy of the reactants or products
02 · C1.1.5–C1.1.6 · Induced fit

Not a lock
and key.
A glove.

The active site isn't a rigid mould. When the substrate binds, both it and the enzyme change shape — and that reshaping is what strains the substrate's bonds and drives the reaction. Step through it, or press Play.

enzyme active site substrate products substrate approaches
Molecular motion first

Nothing happens until a substrate physically collides with the active site — moving randomly in Brownian motion, it must hit with enough energy and the correct orientation. Raising the temperature or the concentration makes those successful collisions more frequent.

03 · C1.1.7–C1.1.10 · Specificity, denaturation & rate

Shape is
everything.

Because catalysis depends on a precisely shaped active site, anything that changes that shape changes what the enzyme can do — or destroys it entirely.

Idea
What it means
Why it matters
Specificity
Only a substrate complementary to the active site can bind.
Each reaction in the cell can be controlled independently by its own enzyme.
Denaturation
High temperature or extreme pH breaks the bonds holding the protein's 3-D shape.
The active site loses its shape and the enzyme stops working — usually permanently.
rate TEMPERATURE temperature → optimum, then denatures pH pH → peaks at optimum pH [SUBSTRATE] [substrate] → plateaus when saturated
Rate rises with temperature until the enzyme denatures · peaks at an optimum pH · and plateaus once every active site is occupied and the enzyme is saturated with substrate
04 · C1.1.11 · Inside & outside the cellHL

Some stay in.
Some are
sent out.

 
Intracellular
Extracellular
Where they act
inside the cell that made them
outside the cell, after being secreted
Made by
free ribosomes in the cytoplasm
ribosomes on the rough ER, packaged by the Golgi, released by exocytosis
Example
glycolysis in the cytoplasm; Krebs cycle in the mitochondria
digestive enzymes such as amylase and lactase in the gut
05 · C1.1.12 · Heat from metabolismHL

Waste heat,
put to use.

Why it happens

No energy transfer is ever 100% efficient, so every metabolic reaction loses some energy as heat. In respiration, only around 40% of the energy in glucose is captured in ATP — the rest is released as heat. It is unavoidable.

Why it's useful

Endotherms — mammals and birds — use this heat to hold a body temperature above their surroundings. What would otherwise be waste becomes the basis of temperature homeostasis.

06 · C1.1.13 · Metabolic pathwaysHL

Chains
and cycles.

Metabolism is organised into pathways — sequences of enzyme-controlled steps. Tap each type.

LINEAR CHAIN A enzyme 1 B enzyme 2 C enzyme 3 D each step has its own enzyme · e.g. glycolysis feedback inhibition: the end product switches off enzyme 1 CYCLICAL PATHWAY X X Y Z the starting molecule is regenerated each turn e.g. the Krebs cycle, the Calvin cycle chains and cycles let many enzymes control one overall change — more points to regulate
Why pathways?

Breaking one overall change into many small enzyme-controlled steps gives far more points of regulatory control. Each intermediate is a place the cell can speed up, slow down, or switch the whole pathway off.

07 · C1.1.14–C1.1.15 · Enzyme inhibitionHL

Two ways
to switch
an enzyme off.

Inhibitors slow enzymes down — and where they bind decides whether more substrate can overcome them. Tap each mechanism.

COMPETITIVE I inhibitor resembles the substrate and blocks the active site itself more substrate can out-compete it NON-COMPETITIVE I allosteric site inhibitor binds a different (allosteric) site the active site changes shape extra substrate cannot reverse it STATINS · a competitive example statins competitively inhibit HMG-CoA reductase, the enzyme that makes cholesterol, lowering cholesterol production and the risk of heart disease FEEDBACK · isoleucine inhibits the first enzyme in its own pathway
Where it binds decides everything

A competitive inhibitor blocks the active site itself, so adding more substrate can out-compete it. A non-competitive inhibitor binds an allosteric site elsewhere, changing the active site's shape — extra substrate cannot reverse that.

The graphs
give it away.

Plot rate against substrate concentration and the two mechanisms separate cleanly. Toggle each inhibitor and watch the curve move — the whole distinction is whether Vmax can still be reached.

rate → substrate concentration → Vmax lower Vmax
No inhibitor

The standard curve: rate climbs steeply, then levels off at Vmax once every active site is working flat out and the enzyme is saturated. The dashed line marks that ceiling — compare where each inhibitor leaves it.

08 · The bigger picture

Where this
fits.

Tap a concept to light up how it connects.

lowers acts through its binds by destroyed by blocked by Enzyme Activation energy Active site Induced-fit binding Denaturation Inhibitors
Overview

Everything about an enzyme flows from one shaped pocket. The active site lowers activation energy by induced fit, its specificity controls which reaction happens, and denaturation or inhibitors work by disrupting that same shape.

Tap any concept to trace its connections · tap the background to reset

09 · Your turn

Fill in
the gaps.

Drag each term into the gap it belongs in. Two terms are traps.

Placed: 0 / 0
Enzymes speed up reactions by lowering thedrop
The substrate binds to the enzyme'sdrop
Both enzyme and substrate change shape on binding — thedrop
Loss of an enzyme's shape by heat or pH is calleddrop
Enzymes made by ribosomes on the rough ER and secreted aredrop
An inhibitor blocking the active site itself isdrop
An inhibitor binding elsewhere, at androp
The Krebs cycle is an example of a pathway that isdrop
10 · Check yourself

IB-style
multiple choice.

Single best answer, Paper 1 style. HL-only questions are marked.

Score: 0 / 0