Biology by Bradford
Biology by Bradford · AP Biology · Unit 3.1

Enzymes

A pocket of a few amino acids, holding one molecule in exactly the right position — and a reaction that would take years happens in milliseconds.

AP · U3.1CED 3.1–3.2Interactive lesson
Concept 01 · CED 3.1

A barrier, not a push

Most reactions that should happen do not, because nothing has enough energy to get started. An enzyme does not provide that energy — it lowers the amount needed.

The problem

Activation energy

Bonds must be strained before they break. At body temperature few molecules can manage it unaided.

The solution

A lower route

The active site strains bonds and orients reactants, so far more collisions succeed.

The limit

ΔG is untouched

Where the reaction ends up is set by thermodynamics. The enzyme only decides how quickly it gets there.

PROGRESS OF REACTIONFREEENERGYEa WITHOUT ENZYMEEa WITH ENZYMESUBSTRATEPRODUCTΔGUNCHANGED
Note carefully what the pink curve changes and what it does not. The peak is lower, so the reaction proceeds far faster — but the substrate and product sit at exactly the same energies, so ΔG is identical. An enzyme changes the route, never the destination.
Diagram · interactive

Anatomy of an enzyme

Tap each part. Almost every property here descends from tertiary structure.

GLOBULAR PROTEINACTIVE SITESUBSTRATER GROUPSTERTIARY STRUCTURE HOLDS THE SHAPEAFTER THE REACTIONunchangedAND REUSABLETAP A PART
Diagram

A pocket in a folded protein

Tap the body, the active site, the substrate, the R groups, the fold, or the summary panel.

Signature interactive · CED 3.2

One catalytic cycle

Five steps, and at the end the enzyme is exactly as it started. Watch the site close in step three — that is induced fit.

Concept 02 · CED 3.2

What a catalyst cannot do

Half the marks in this topic come from knowing the limits rather than the mechanism.

Can

Increase rate

Often by a factor of a million or more, by lowering the activation energy barrier.

Cannot

Change equilibrium

Forward and reverse reactions are sped equally, so the equilibrium position does not move.

Cannot

Be consumed

The enzyme is regenerated every cycle, which is why cells need so little of it.

Speeds it upLOWERS ACTIVATION ENERGYChanges ΔGSTART AND END UNCHANGEDIs used upEMERGES UNCHANGEDAN ENZYME CHANGES THE ROUTE, NEVER THE DESTINATION
If an exam question says an enzyme made a reaction happen that otherwise would not, or that the enzyme was used up, or that the products contain more energy than before, something in the statement is wrong. Only the first of these three is a real property of catalysis.
Concept map · interactive

How it all hangs together

Tap a node to light up its connections. The pink dashed link is the boundary of what catalysis can do.

folds intocreatesgivesallowsthenlowersraisesnot changedroute only, not destinationPolypeptideTertiary foldActive siteSpecificityE–S complexInduced fitActivation energyReaction rateΔG
Concept map

Tap a node

Read down the left for structure, across the right for consequence.

Retrieval · drag and drop

Fill the gaps

Drag a term into a gap, or tap a term and then tap a gap. Two terms belong nowhere.

active sitesubstrateactivation energyinduced fitspecificcomplementarycatalystunchanged denaturedhydrolysis

An enzyme binds its in a pocket called the , whose shape is to that molecule — which is why each enzyme is to one reaction. Binding causes the site to close more tightly, a model known as . The enzyme works by lowering the of the reaction. Because it is a , it emerges from the reaction and can be used again immediately.

Check yourself · AP-style

Six questions

Single best answer. You get the reasoning as soon as you commit.