Biology  by Bradford
support
Free · IB Biology · revision map

C1.1 Enzymes and metabolism: revision map

The subtopic in the middle and twelve tasks round it: label four diagrams, complete two tables, put a process in order and fill 60 gaps. Every standard level statement has a box; the four boxes for higher level only are dashed and badged HL, and drop off for an SL class. Type into the blanks and check them, or print it on A4, Letter or A3 with an answer key.

C1.1 practice questionsThe whole C1 map

C1.1

Enzymes and metabolism

Molecules · Interaction and interdependenceName

C1.1.3Building up, breaking down

ProcessAnabolic or catabolic?What happens
Protein synthesisamino acids joined into polypeptides
Glycogen formationglucose monomers joined by
Photosynthesissugars built from carbon dioxide and water
Digestionmacromolecules split into monomers by
Respirationglucose and other substrates

Anabolism builds macromolecules from monomers; catabolism breaks them down.

C1.1.14, C1.1.15Blocking an enzymeHL

123
  1. 1
  2. 2
  3. 3

The inhibitor on the left is : it resembles the substrate and binds where the substrate would. The one on the right is : its binding changes the enzyme's , so the substrate no longer fits. Both bind reversibly. Adding more substrate the first kind of inhibition but not the second. , which lower blood cholesterol, work like the one on the left.

C1.1.16Pathway controlHL

12345

Isoleucine is made from by a chain of five enzymes. When isoleucine builds up, it binds to an on the first enzyme and inhibits it: the end product controls its own production by . As isoleucine is used up it , and the pathway runs again.

C1.1.17How penicillin worksHL

Penicillin binds to the active site of , a bacterial enzyme that builds cross-links in the cell . The binding is : it chemically changes the active site, so the enzyme never works again. Walls weaken and growing bacteria . Resistant bacteria make a version of the enzyme whose active site has a different , so penicillin no longer binds.

C1.1.1, C1.1.2Why cells need enzymes

Enzymes are biological : they speed up reactions without being used up, so cells get fast reactions at body temperature. is the web of interdependent chemical reactions in an organism. Each enzyme is , catalysing just one reaction, so a cell needs many different enzymes and can steer the whole web by controlling them.

C1.1.7, C1.1.8Three factors

FactorShape of the graphWhy
Temperaturerises to an , then falls steeplymore kinetic energy, so more frequent collisions, until heat denatures the enzyme
pHa peak, falling away on changed charges in the active site alter its shape, so fewer substrates bind
Substrate concentrationrises, then levels off at a more collisions, until every active site is

Sketch graphs like these are : they can be tested against the results of enzyme experiments.

C1.1Enzymes and metabolism

C1.1.9Measuring the rate

03060901200122436time / sO₂ / cm³

Rate is the amount of product made per unit . A tangent drawn at the start of the curve gives the rate: here 24 cm³ in 60 s, or cm³ s⁻¹. The curve levels off as the runs out.

C1.1.10Lowering the barrier

progress of reactionenergy1234
  1. 1
  2. 2
  3. 3
  4. 4

Energy is needed to bonds in the substrate, and energy is as the bonds of the products form. An enzyme the energy that must be put in to start the reaction, so more collisions succeed at body temperature.

C1.1.4, C1.1.7A close fit

123
  1. 1
  2. 2
  3. 3

The pocket where substrates bind is lined by only a few , but its shape and chemistry depend on how the whole protein folds. Only a substrate that matches both can bind, so each enzyme is . Heat or extreme pH can change the pocket for good, so the substrate no longer fits: the enzyme is .

C1.1.5, C1.1.6One catalytic cycle

Number the steps in order.

  1. The products are released, leaving the active site free for another substrate.
  2. Substrate and active site both change shape slightly: induced fit.
  3. Bonds in the substrate are weakened, and it is converted into products.
  4. Random movement brings a substrate molecule close to an enzyme.
  5. The substrate collides with the active site and binds to it.

Collisions need movement: usually the substrate moves, but a large substrate may be , and some enzymes are held still by being embedded in .

C1.1.11, C1.1.12, C1.1.13Pathways and heatHL

Glycolysis and the Krebs cycle are catalysed by enzymes; the enzymes of chemical digestion are , working in the gut once secreted. Glycolysis is a pathway, but in the Krebs and Calvin cycles the last step regenerates the molecule the first step uses. No reaction transfers energy with 100% efficiency, so metabolism always releases , which mammals and birds use to keep their body temperature constant.

C1.1 examA simplified model of an enzyme

A simplified model of an enzyme1234
  1. 1
  2. 2
  3. 3
  4. 4
Word bank 0.4activation energyactive siteallosteric siteamino acid of the active siteamino acidsanabolicbondbreakburstcataboliccatalystscompetitivecondensationdenaturedeither sideenzymeextracellularfeedback inhibitionheathydrolysisimmobilisedinitialintracellularirreversibleleaveslinearlowersmembranesMetabolismmodelsnon-competitiveoccupiedoptimumovercomesoxidisedplateauproductsreleasedshapespecificStatinssubstratethreoninetimetranspeptidasewallwithout enzyme

Answer key

Every box on the sheet with its gaps filled in, as the subtopic reads in full.
  1. GapsWhy cells need enzymes

    Enzymes are biological catalysts: they speed up reactions without being used up, so cells get fast reactions at body temperature. Metabolism is the web of interdependent chemical reactions in an organism. Each enzyme is specific, catalysing just one reaction, so a cell needs many different enzymes and can steer the whole web by controlling them.

  2. TableBuilding up, breaking down

    ProcessAnabolic or catabolic?What happens
    Protein synthesisanabolicamino acids joined into polypeptides
    Glycogen formationanabolicglucose monomers joined by condensation
    Photosynthesisanabolicsugars built from carbon dioxide and water
    Digestioncatabolicmacromolecules split into monomers by hydrolysis
    Respirationcatabolicglucose and other substrates oxidised

    Anabolism builds macromolecules from monomers; catabolism breaks them down.

  3. LabelA close fit

    1. substrate
    2. active site
    3. enzyme

    The pocket where substrates bind is lined by only a few amino acids, but its shape and chemistry depend on how the whole protein folds. Only a substrate that matches both can bind, so each enzyme is specific. Heat or extreme pH can change the pocket for good, so the substrate no longer fits: the enzyme is denatured.

  4. OrderOne catalytic cycle

    1. Random movement brings a substrate molecule close to an enzyme.
    2. The substrate collides with the active site and binds to it.
    3. Substrate and active site both change shape slightly: induced fit.
    4. Bonds in the substrate are weakened, and it is converted into products.
    5. The products are released, leaving the active site free for another substrate.

    Collisions need movement: usually the substrate moves, but a large substrate may be immobilised, and some enzymes are held still by being embedded in membranes.

  5. TableThree factors

    FactorShape of the graphWhy
    Temperaturerises to an optimum, then falls steeplymore kinetic energy, so more frequent collisions, until heat denatures the enzyme
    pHa peak, falling away on either sidechanged charges in the active site alter its shape, so fewer substrates bind
    Substrate concentrationrises, then levels off at a plateaumore collisions, until every active site is occupied

    Sketch graphs like these are models: they can be tested against the results of enzyme experiments.

  6. GapsMeasuring the rate

    Rate is the amount of product made per unit time. A tangent drawn at the start of the curve gives the initial rate: here 24 cm³ in 60 s, or 0.4 cm³ s⁻¹. The curve levels off as the substrate runs out.

  7. LabelLowering the barrier

    1. substrate
    2. products
    3. activation energy
    4. without enzyme

    Energy is needed to break bonds in the substrate, and energy is released as the bonds of the products form. An enzyme lowers the energy that must be put in to start the reaction, so more collisions succeed at body temperature.

  8. GapsPathways and heat HL

    Glycolysis and the Krebs cycle are catalysed by intracellular enzymes; the enzymes of chemical digestion are extracellular, working in the gut once secreted. Glycolysis is a linear pathway, but in the Krebs and Calvin cycles the last step regenerates the molecule the first step uses. No reaction transfers energy with 100% efficiency, so metabolism always releases heat, which mammals and birds use to keep their body temperature constant.

  9. LabelBlocking an enzyme HL

    1. substrate
    2. active site
    3. allosteric site

    The inhibitor on the left is competitive: it resembles the substrate and binds where the substrate would. The one on the right is non-competitive: its binding changes the enzyme's shape, so the substrate no longer fits. Both bind reversibly. Adding more substrate overcomes the first kind of inhibition but not the second. Statins, which lower blood cholesterol, work like the one on the left.

  10. GapsPathway control HL

    Isoleucine is made from threonine by a chain of five enzymes. When isoleucine builds up, it binds to an allosteric site on the first enzyme and inhibits it: the end product controls its own production by feedback inhibition. As isoleucine is used up it leaves, and the pathway runs again.

  11. GapsHow penicillin works HL

    Penicillin binds to the active site of transpeptidase, a bacterial enzyme that builds cross-links in the cell wall. The binding is irreversible: it chemically changes the active site, so the enzyme never works again. Walls weaken and growing bacteria burst. Resistant bacteria make a version of the enzyme whose active site has a different shape, so penicillin no longer binds.

  12. Exam diagramA simplified model of an enzyme

    1. substrate
    2. active site
    3. amino acid of the active site
    4. bond